The Complaints by enlightened reformers and royal decrees interrupted the growth of the devotion to San Felipe at a time when his cult still addressed persistent tension between creoles and peninsulars. By distancing the crown from Catholic devotion and especially from public religion, the monarchy lost its monopoly on moral authority and the ability to call upon the useful mediating function of religious figures.
Franciscans and Jesuits generated many reports and letters dealing with the Japanese mission and the Nagasaki martyrs. Some of this material was reprinted in the Archivo Ibero-Americano. Other documents came from the Franciscan archive of the Province of the Santo Evangelio in Mexico City, the Archivo Cancillería de España and the Vatican Secret Archive.
The Spanish friars clashed, too, with their fellow Christian missionaries, the Portuguese Jesuits. The conflict between the orders, which gave rise to many documents articulating objectives and activities, highlighted the two orders’ incompatible visions of the post-Trent Catholic Church. Starting in the late fifteenth century, however, the mainstream church came under attack from reform-minded officials and new regular orders. Clerics like Cardinal Francisco Cisneros believed that, in general, people of the Catholic Church in Spain were too ignorant, superstitious, comfortable and well-fed.
The Company of Jesus, founded by Spaniard Ignacio Loyola emphasized elements of mysticism, evangelical work and humanism. In his seminal work on meditative prayer, Spiritual Exercises, Loyola drew so deeply from the mystical tradition that he was jailed by the Inquisition for heterodoxy. . As an ex-soldier himself, Loyola envisioned the order as an active and highly-trained unit of priests. Accordingly, he did not require the Jesuits to use a habit or to attend mass. Loyola inculcated a keen sense of duty and obedience to the order’s general in Rome. The Jesuits were also firmly grounded in secular society; they integrated commerce, printing, patronage and politics into their ministry with fewer qualms than other orders.
Luther’s revolt against the institutional church took away the middle ground from moderate Catholic reformers with similar tendencies. Humanists fell out of favor and the Inquisition persecuted the mystically-inspired Illuminist movement. The Inquisition that had developed institutional capacity in processing conversos and Illuminists widened its scope from enforcing tenets of faith to becoming a guardian of Spanish morals.
Between religious wars, internal Church reform and Spain’s prominent support of Catholicism, the Spanish began to consider themselves superior Catholics. Charles V and Philip II arrested Spanish living abroad who might be heretical and bring social contaminants like Lutheranism or homosexuality back with them. Likewise, Philip II distrusted the religious credentials of non-Spanish; he purged the Spanish Catholic church of foreigners and restricted the emigration of clergy from other nations to Spanish colonies.
Realities in New Spain, Africa and India would quickly disabuse missionaries of their cherished dream of a new Jerusalem. Conversion proved neither quick nor easy. Faced with intransigence and apparent barbarity, the Spanish even questioned the Indians’ humanity.Idolatry persisted despite the efforts of missionaries; evangelization seemed to require stronger measures than inspired preaching. Faced with disappointing results and seemingly intractable Indian idolatry, missionaries in the field began to favor stricter physical punishment and embarked on violent campaigns to eradicate idolatry.
The Jesuits parleyed Japanese commercial interests into permission to evangelize on the islands. Their language skills made them useful to both Portuguese and Japanese. The clergymen let it be known in negotiations that they could influence the destination of the Portuguese ship and its lucrative cargo. Using their position as indispensable commercial intermediaries, the Jesuits convinced the daimyo to permit them to proselytize in their territories. Later, the clerics became directly involved in trade, serving as wholesalers, agents and currency speculators. Although the Jesuits introduced a new religion, Hideyoshi treated the order very much like another Buddhist sect. Buddhist monks had a long tradition of militarization, autonomy and intervention into national politics.
As a Dominican and a diplomatic envoy, Juan Cobo represented the composite administration of Catholicism and monarchy of the Spanish Empire in the Philippines. He suggested that the reason no Spanish ship had visited Japan was because the Jesuits held a monopoly on Nagasaki. One of Hideyoshi’s last internal conquests was Kyushu, the home base of the Jesuits in 1586 where he witnessed firsthand the Christians’ power. Upon hearing the Jesuit Vice-provincial boast that he could summon two Portuguese warships, Hideyoshi prepared to take action against the Christian sect. He accused the Jesuits of having propagated a dangerous creed and instilling blind obedience among important daimyos and their samurai. Hideyoshi’s forces destroyed sixty of two hundred fifty Jesuit establishments. After this initial campaign though, the letter of the law was never fully enforced. The Jesuits returned to their missions and commercial projects albeit cautiously. They adopted Japanese dress and restricted their proselytizing to behind doors. By the end of Cobo’s mission in 1593 he had in his hands a retraction of the Japanese military threats against the Franciscans and a personal invitation from the regent permitting ten Franciscan Spanish friars to live in Japan. Since the friars believed that the regent invited them as a Christian counterweight to the Jesuits, they considered that their security depended upon strict separation from that order. The result was to discourage the friars from making common cause with their fellow Catholics. Indeed, the relationship between the Portuguese Jesuits and the Spanish Franciscans slowly deteriorated over three years from polite assistance to outright enmity. These problems expressed themselves in character assassination, accusations of poaching converts and reams of documents.
https://www.lib.utexas.edu/etd/d/2008/conoverc30674/conoverc30674.pdf
So here it is all the trouble was within the Church its self. Both orders telling on each other to the Old World, even making things up? Sounds to me like what each order had to say about the other was like a bunch of old ladies gossiping. No wonder the Indians went back to their old ways and declaring the Whitemans GOD is dead and made of wood. How could an Indian believe in a religion that allowed these actions? This is what caused the King of Spain to remove all but Spanish missionaries.
Sorry so long but a link would not do.